Balík: python3-bcbio (1.2.9-2) [contrib]

[ Zdroj: bcbio  ]

library for analysing high-throughput sequencing data

This package installs the Python 3 libraries of the bcbio-nextgen toolkit implementing best-practice pipelines for fully automated high throughput sequencing analysis.

A high-level configuration file specifies inputs and analysis parameters to drive a parallel pipeline that handles distributed execution, idempotent processing restarts and safe transactional steps. The project contributes a shared community resource that handles the data processing component of sequencing analysis, providing researchers with more time to focus on the downstream biology.

Ostatné balíky súvisiace s balíkom python3-bcbio

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-biopython

  Python3 library for bioinformatics

• dep: python3-cyvcf2

  VCF parser based on htslib (Python 3)

• dep: python3-joblib

  nástroje na nenáročnú tvorbu rúr v jazyku Python

• dep: python3-logbook

  logging system for Python that replaces the standard library's module (Python 3)

• dep: python3-matplotlib

  systém v Pythone na vykresľovanie v štýle podobnom Matlabu - Python 3

• dep: python3-psutil

  modul poskytujúci funkcie uľahčujúce správu procesov (Python 3)

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: python3-requests

  elegantná a jednoduchá knižnica HTTP pre Python 3 pre ľudí

• dep: python3-scipy

  vedecké nástroje pre Python 3

• dep: python3-six

  Python 2 and 3 compatibility library

• dep: python3-tornado

  škálovateľný, neblokujúci webový server a nástroje - balík pre Python 3

• rec: cnvkit

  Copy number variant detection from targeted DNA sequencing

• rec: gsort

  sort genomic data

• rec: libfreetype6

  správa písiem FreeType 2 - zdieľané knižnice

• rec: libhts-dev

  development files for the HTSlib

• rec: lumpy-sv

  general probabilistic framework for structural variant discovery

• rec: mosdepth

  BAM/CRAM depth calculation biological sequencing

• rec: multiqc

  output integration for RNA sequencing across tools and samples

• rec: python3-arrow

  Python3 library to manipulate dates, times, and timestamps

• rec: python3-geneimpacts

  wraps command line tools to assess variants in gene sequences

• rec: python3-h5py

  general-purpose Python interface to hdf5

• rec: python3-pyvcf

  virtuálny balík poskytovaný balíkom python3-vcf

• rec: python3-seqcluster

  analysis of small RNA in NGS data

• rec: python3-statsmodels

  Python3 module for the estimation of statistical models

• rec: python3-tabulate

  pretty-print tabular data in Python3

• rec: r-bioc-purecn

  copy number calling and SNV classification using targeted short read sequencing

• rec: r-bioc-titancna

  Subclonal copy number and LOH prediction from whole genome sequencing

• rec: r-other-wasabi

  prepare Sailfish and Salmon output for downstream analysis using GNU R

• rec: seqan-apps

  C++ library for the analysis of biological sequences

• rec: snpeff

  genetic variant annotation and effect prediction toolbox - tool

• rec: vcfanno

  annotate a VCF with other VCFs/BEDs/tabixed files

• rec: vt

  toolset for short variant discovery in genetic sequence data

• sug: bcbio-doc

  Balík nie je dostupný

• sug: python3-bioblend

  CloudMan and Galaxy API library (Python 3)

• sug: python3-dnapilib

  adapter prediction for small RNA sequencing - library

• sug: python3-msgpack

  implementácia formátu MessagePack v Python 3

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