Пакет: snakemake (7.32.4-6)

[ Источник: snakemake  ]

pythonic workflow management system

Build systems like GNU Make are frequently used to create complicated workflows, e.g. in bioinformatics. This project aims to reduce the complexity of creating workflows by providing a clean and modern domain specific language (DSL) in Python style, together with a fast and comfortable execution environment.

Другие пакеты, относящиеся к snakemake

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  сертификаты распространённых центров сертификации (CA)

• dep: libjs-bootstrap

  HTML, CSS and JS framework

• dep: libjs-jquery

  JavaScript library for dynamic web applications

• dep: python3

  интерактивный высокоуровневый объектно-ориентированный язык (версия python3 по умолчанию)

• dep: python3-configargparse

  replacement for argparse with config files and environment variables

• dep: python3-connection-pool

  thread-safe connection pool for Python3

• dep: python3-datrie

  Super-fast, efficiently stored Trie for Python 3

• dep: python3-docutils

  text processing system for reStructuredText (implemented in Python 3)

• dep: python3-git

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• dep: python3-humanfriendly

  Python3 library to make user friendly text interfaces

• dep: python3-jinja2 (>= 3.0~)

  small but fast and easy to use stand-alone template engine

• dep: python3-jsonschema

  An(other) implementation of JSON Schema

• dep: python3-nbformat

  Jupyter notebook format (Python 3)

• dep: python3-packaging

  core utilities for python3 packages

• dep: python3-platformdirs

  determining appropriate platform-specific directories (Python 3)

• dep: python3-psutil

  module providing convenience functions for managing processes (Python3)

• dep: python3-pulp (>= 2.0~)

  LP modeler - Python 3.x

• dep: python3-ratelimiter

  simple Python library for limiting the rate of operations

• dep: python3-requests

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• dep: python3-retry

  easy to use retry decorator

• dep: python3-smart-open (>= 3.0~)

  utils for streaming large files

• dep: python3-stopit

  Timeout control decorator and context manager for Python3

• dep: python3-tabulate

  pretty-print tabular data in Python3

• dep: python3-throttler

  easy throttling with asyncio support for Python3

• dep: python3-toposort

  topological sort algorithm - Python 3 module

• dep: python3-wrapt

  decorators, wrappers and monkey patching. - Python 3.x

• dep: python3-yaml

  YAML parser and emitter for Python3

• dep: python3-yte

  YAML template engine with Python expressions

• rec: cwltool

  Common Workflow Language reference implementation

• rec: imagemagick

  программы для работы с изображениями — двоичные файлы
  также виртуальный пакет, предоставляемый graphicsmagick-imagemagick-compat, imagemagick-6.q16

• rec: python3-azure-storage

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• rec: python3-biopython

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• rec: python3-boto3

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• rec: python3-botocore

  Low-level, data-driven core of boto 3 (Python 3)

• rec: python3-dropbox

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• rec: python3-flask

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• rec: python3-ftputil

  high-level FTP client library for Python

• rec: python3-irodsclient

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• rec: python3-kubernetes

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• rec: python3-pygments

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• rec: python3-tz

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• rec: python3-urllib3

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• rec: python3-yappi

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• sug: slurm-client

  Slurm client side commands

• sug: snakemake-doc

  documentation for pythonic workflow management system

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Архитектура	Размер пакета	В установленном виде	Файлы
all	310,3 Кб	1 560,0 Кб	[список файлов]