Пакет: cutesv (2.1.1-1)

[ Источник: cutesv  ]

comprehensive discovery of structural variations of genomic sequences

Long-read sequencing enables the comprehensive discovery of structural variations (SVs). However, it is still non-trivial to achieve high sensitivity and performance simultaneously due to the complex SV characteristics implied by noisy long reads.

cuteSV is a sensitive, fast and scalable long-read-based SV detection approach. cuteSV uses tailored methods to collect the signatures of various types of SVs and employs a clustering-and-refinement method to analyze the signatures to implement sensitive SV detection. Benchmarks on real Pacific Biosciences (PacBio) and Oxford Nanopore Technology (ONT) datasets demonstrate that cuteSV has better yields and scalability than state-of-the-art tools.

Другие пакеты, относящиеся к cutesv

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-biopython

  Python3 library for bioinformatics

• dep: python3-cigar

  manipulate SAM cigar strings

• dep: python3-numpy

  Fast array facility to the Python language (Python 3)

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: python3-scipy

  scientific tools for Python 3

• dep: python3-sklearn

  Python modules for machine learning and data mining - Python 3

• dep: python3-vcf

  Variant Call Format (VCF) parser for Python 3

Загрузка cutesv

Загрузить для всех доступных архитектур

Архитектура	Размер пакета	В установленном виде	Файлы
all	36,5 Кб	225,0 Кб	[список файлов]