Пакет: r-cran-alakazam (1.3.0-1)

[ Источник: r-cran-alakazam  ]

Immunoglobulin Clonal Lineage and Diversity Analysis

Alakazam is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq) and provides a set of tools to investigate lymphocyte receptor clonal lineages, diversity, gene usage, and other repertoire level properties, with a focus on high-throughput immunoglobulin (Ig) sequencing.

Alakazam serves five main purposes:

 * Providing core functionality for other R packages in the Immcantation
   framework. This includes common tasks such as file I/O, basic DNA
   sequence manipulation, and interacting with V(D)J segment and gene
   annotations.
 * Providing an R interface for interacting with the output of the
   pRESTO and Change-O tool suites.
 * Performing lineage reconstruction on clonal populations of Ig
   sequences and analyzing the topology of the resultant lineage trees.
 * Performing clonal abundance and diversity analysis on lymphocyte
   repertoires.
 * Performing physicochemical property analyses of lymphocyte receptor
   sequences.

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• dep: libc6 (>= 2.11) [mips64el, s390x]

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  dep: libc6 (>= 2.14) [amd64]

  dep: libc6 (>= 2.17) [arm64, ppc64el]

• dep: libgcc-s1 (>= 3.0)

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• dep: libstdc++6 (>= 13.1)

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• dep: r-api-4.0

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• dep: r-bioc-biostrings (>= 2.56.0)

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• dep: r-bioc-iranges (>= 2.22.2)

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• dep: r-cran-airr (>= 1.4.1)

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• dep: r-cran-dplyr (>= 1.0)

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Архитектура	Размер пакета	В установленном виде	Файлы
amd64	2 362,0 Кб	2 845,0 Кб	[список файлов]
arm64	2 356,8 Кб	2 853,0 Кб	[список файлов]
mips64el	2 356,0 Кб	2 859,0 Кб	[список файлов]
ppc64el	2 361,4 Кб	2 917,0 Кб	[список файлов]
s390x	2 360,8 Кб	2 845,0 Кб	[список файлов]