Пакет: jmodeltest (2.1.10+dfsg-12)

[ Источник: jmodeltest  ]

HPC selection of models of nucleotide substitution

jModelTest is a tool to carry out statistical selection of best-fit models of nucleotide substitution. It implements five different model selection strategies: hierarchical and dynamical likelihood ratio tests (hLRT and dLRT), Akaike and Bayesian information criteria (AIC and BIC), and a decision theory method (DT). It also provides estimates of model selection uncertainty, parameter importances and model-averaged parameter estimates, including model-averaged tree topologies. jModelTest 2 includes High Performance Computing (HPC) capabilities and additional features like new strategies for tree optimization, model- averaged phylogenetic trees (both topology and branch length), heuristic filtering and automatic logging of user activity.

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• dep: java-wrappers

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• dep: libmpj-java

  Java library for parallel applications for multicore processors and clusters

• dep: libpal-java

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• dep: phyml

  Phylogenetic estimation using Maximum Likelihood

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