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Пакет исходного кода: snpeff (5.2.f+dfsg-1)

Ссылки для snpeff

Ресурсы Debian:

Сопровождающие:

Внешние ресурсы:

Сайт [pcingola.github.io]

Из этого пакета исходного кода собираются следующие двоичные пакеты:

libsnpeff-java: genetic variant annotation and effect prediction toolbox - lib
libsnpeff-java-doc: Documentation for Snp Effect
snpeff: genetic variant annotation and effect prediction toolbox - tool

Другие пакеты, относящиеся к snpeff

для сборки

build-depends-indep

adep: debhelper-compat (= 13)

Пакет недоступен
adep: javahelper

Helper scripts for packaging Java programs
adep: default-jdk

Standard Java or Java compatible Development Kit
adep: default-jdk-doc

Standard Java or Java compatible Development Kit (documentation)
adep: maven-debian-helper

Helper tools for building Debian packages with Maven
adep: libmaven-assembly-plugin-java

Maven Assembly Plugin
adep: libtrove3-java

high performance collections for java
adep: libhtsjdk-java

Java API for high-throughput sequencing data (HTS) formats
adep: libbiojava6-java

Java API to biological data and applications (version 6)
adep: junit5

JUnit regression test framework for Java
adep: libcommons-codec-java

encoder and decoders such as Base64 and hexadecimal codec
adep: libcommons-io-java

Common useful IO related classes
adep: libcommons-cli-java

Command line arguments and options parsing library
adep: libcommons-math3-java

Java lightweight mathematics and statistics components
adep: libfreemarker-java

template engine written in Java
adep: libjaxb-api-java

Java Architecture for XML Binding API
adep: libmaven-javadoc-plugin-java

Maven Javadoc Plugin
adep: libbiojava6-java-doc

[Biology] Documentation for BioJava 6
adep: libtrove3-java-doc

high performance collections for java
adep: libcharts4j-java

free, lightweight charts and graphs Java API
adep: libapfloat-java

high performance arbitrary precision arithmetic library for Java
adep: libdistlib-java

Java library of statistical distribution functions

Download snpeff

Файл	Размер (в Кб)	Контрольная сумма MD5
snpeff_5.2.f+dfsg-1.dsc	2,5 Кб	011ef979205679743af72797255d3874
snpeff_5.2.f+dfsg.orig.tar.xz	151 303,2 Кб	4a630eadf7a8b0d65e8341356a924a02
snpeff_5.2.f+dfsg-1.debian.tar.xz	14,0 Кб	e508f98c9ec478a09c4c29bcadfb0e1d

Репозиторий пакетов исходного кода Debian (VCS: Git): https://salsa.debian.org/med-team/snpeff.git
Репозиторий пакетов исходного кода Debian (доступен просмотр): https://salsa.debian.org/med-team/snpeff