Пакет: fasttree (2.1.11-2) [debports]
Ссылки для fasttree
Ресурсы Debian:
Исходный код :
Не найденСопровождающие:
Внешние ресурсы:
- Сайт [www.microbesonline.org]
Подобные пакеты:
phylogenetic trees from alignments of nucleotide or protein sequences
FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. It handles alignments with up to a million of sequences in a reasonable amount of time and memory. For large alignments, FastTree is 100-1,000 times faster than PhyML 3.0 or RAxML 7.
FastTree is more accurate than PhyML 3 with default settings, and much more accurate than the distance-matrix methods that are traditionally used for large alignments. FastTree uses the Jukes-Cantor or generalized time-reversible (GTR) models of nucleotide evolution and the JTT (Jones-Taylor-Thornton 1992) model of amino acid evolution. To account for the varying rates of evolution across sites, FastTree uses a single rate for each site (the "CAT" approximation). To quickly estimate the reliability of each split in the tree, FastTree computes local support values with the Shimodaira-Hasegawa test (these are the same as PhyML 3's "SH-like local supports").
This package contains a single threaded version (fasttree) and a parallel version which uses OpenMP (fasttreMP).
Другие пакеты, относящиеся к fasttree
|
|
|
|
-
- dep: libc6 (>= 2.29)
- библиотека GNU C: динамически подключаемые библиотеки
также виртуальный пакет, предоставляемый libc6-udeb
-
- dep: libgomp1 (>= 6)
- вспомогательная библиотека GCC OpenMP (GOMP)
Загрузка fasttree
Архитектура | Размер пакета | В установленном виде | Файлы |
---|---|---|---|
sparc64 (неофициальный перенос) | 163,5 Кб | 493,0 Кб | [список файлов] |