Пакет: gubbins (2.3.5-1) [debports]

[ Источник:  ]

phylogenetic analysis of genome sequences

Gubbins supports rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences.

Gubbins (Genealogies Unbiased By recomBinations In Nucleotide Sequences) is an algorithm that iteratively identifies loci containing elevated densities of base substitutions while concurrently constructing a phylogeny based on the putative point mutations outside of these regions. Simulations demonstrate the algorithm generates highly accurate reconstructions under realistic models of short-term bacterial evolution, and can be run in only a few hours on alignments of hundreds of bacterial genome sequences.

Другие пакеты, относящиеся к gubbins

• dep: fasttree

  phylogenetic trees from alignments of nucleotide or protein sequences

• dep: libc6 (>= 2.29)

  библиотека GNU C: динамически подключаемые библиотеки
  также виртуальный пакет, предоставляемый libc6-udeb

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-biopython

  Python3 library for bioinformatics

• dep: python3-dendropy

  DendroPy Phylogenetic Computing Library (Python 3)

• dep: python3-nose

  test discovery and running for Python3 unittest

• dep: python3-reportlab

  ReportLab library to create PDF documents using Python3

• dep: raxml

  синтез филогенетических деревьев по методу максимального правдоподобия

• dep: zlib1g (>= 1:1.1.4)

  библиотека сжатия

Загрузка gubbins

Загрузить для всех доступных архитектур

Архитектура	Размер пакета	В установленном виде	Файлы
ppc64 (неофициальный перенос)	55,4 Кб	312,0 Кб	[список файлов]