Пакет: murasaki-mpi (1.68.6-14)

[ Источник: murasaki  ]

homology detection tool across multiple large genomes (MPI-version)

Murasaki is a scalable and fast, language theory-based homology detection tool across multiple large genomes. It enable whole-genome scale multiple genome global alignments. Supports unlimited length gapped-seed patterns and unique TF-IDF based filtering.

Murasaki is an anchor alignment software, which is

 * exteremely fast (17 CPU hours for whole Human x Mouse genome (with
   40 nodes: 52 wall minutes))
 * scalable (Arbitrarily parallelizable across multiple nodes using MPI.
   Even a single node with 16GB of ram can handle over 1Gbp of sequence.)
 * unlimited pattern length
 * repeat tolerant
 * intelligent noise reduction

This package provides the MPI-enabled binary for murasaki. While this will speed up operation on multi-processor machines it will slow down on a single processor.

Другие пакеты, относящиеся к murasaki-mpi

• dep: libboost-filesystem1.83.0 (>= 1.83.0)

  filesystem operations (portable paths, iteration over directories, etc) in C++

• dep: libboost-iostreams1.83.0 (>= 1.83.0)

  библиотека Boost.Iostreams

• dep: libc6 (>= 2.38)

  библиотека GNU C: динамически подключаемые библиотеки
  также виртуальный пакет, предоставляемый libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  вспомогательная библиотека GCC

• dep: libopenmpi3t64 (>= 5.0.5)

  high performance message passing library -- shared library

• dep: libstdc++6 (>= 14)

  стандартная библиотека GNU C++ версии 3

• dep: murasaki-common

  homology detection tool across multiple large genomes (common files)

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Архитектура	Размер пакета	В установленном виде	Файлы
amd64	676,8 Кб	4 526,0 Кб	[список файлов]