Пакет: pycoqc (2.5.2+dfsg-1)

[ Источник: pycoqc  ]

computes metrics and generates Interactive QC plots

PycoQC computes metrics and generates interactive QC plots for Oxford Nanopore technologies sequencing data

PycoQC relies on the sequencing_summary.txt file generated by Albacore and Guppy, but if needed it can also generates a summary file from basecalled fast5 files. The package supports 1D and 1D2 runs generated with Minion, Gridion and Promethion devices and basecalled with Albacore 1.2.1+ or Guppy 2.1.3+

Другие пакеты, относящиеся к pycoqc

• dep: python3

  интерактивный высокоуровневый объектно-ориентированный язык (версия python3 по умолчанию)

• dep: python3-h5py

  general-purpose Python interface to hdf5

• dep: python3-h5py-serial

  general-purpose Python interface to hdf5 (Python 3 serial)

• dep: python3-jinja2

  small but fast and easy to use stand-alone template engine

• dep: python3-numpy

  Fast array facility to the Python 3 language

• dep: python3-pandas

  data structures for "relational" or "labeled" data

• dep: python3-plotly (>= 4.1.0)

  Python 3 plotting library for publication-quality graphs

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: python3-scipy

  scientific tools for Python 3

• dep: python3-tqdm

  fast, extensible progress bar for Python 3 and CLI tool

Загрузка pycoqc

Загрузить для всех доступных архитектур

Архитектура	Размер пакета	В установленном виде	Файлы
all	35,4 Кб	195,0 Кб	[список файлов]