Пакет: libseqlib2 (1.2.0+dfsg-4)
Ссылки для libseqlib2
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Исходный код libseqlib:
- [libseqlib_1.2.0+dfsg-4.dsc]
- [libseqlib_1.2.0+dfsg.orig.tar.xz]
- [libseqlib_1.2.0+dfsg-4.debian.tar.xz]
Сопровождающие:
Внешние ресурсы:
- Сайт [github.com]
Подобные пакеты:
C++ htslib/bwa-mem/fermi interface for interrogating sequence data
C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment.
Другие пакеты, относящиеся к libseqlib2
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- dep: libc6 (>= 2.14)
- библиотека GNU C: динамически подключаемые библиотеки
также виртуальный пакет, предоставляемый libc6-udeb
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- dep: libfml0 (>= 0.1+git20190320.b499514)
- library for assembling Illumina short reads in small regions
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- dep: libgcc-s1 (>= 3.0)
- вспомогательная библиотека GCC
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- dep: libhts3 (>= 1.10)
- C library for high-throughput sequencing data formats
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- dep: libjsoncpp24 (>= 1.9.4)
- library for reading and writing JSON for C++
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- dep: libssw0 (>= 1.1)
- fast SIMD parallelized implementation of the Smith-Waterman algorithm
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- dep: libstdc++6 (>= 9)
- стандартная библиотека GNU C++ версии 3
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- dep: zlib1g (>= 1:1.1.4)
- библиотека сжатия
Загрузка libseqlib2
Архитектура | Размер пакета | В установленном виде | Файлы |
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amd64 | 158,6 Кб | 565,0 Кб | [список файлов] |