Пакет: qcat (1.1.0-6)

[ Источник: qcat  ]

demultiplexing Oxford Nanopore reads from FASTQ files

Qcat is a command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files. It accepts basecalled FASTQ files and splits the reads into separate FASTQ files based on their barcode. Qcat makes the demultiplexing algorithms used in albacore/guppy and EPI2ME available to be used locally with FASTQ files. Currently qcat implements the EPI2ME algorithm.

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• dep: python3-biopython

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• dep: python3-parasail

  Python3 bindings for the parasail C library

• dep: python3-six

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• dep: python3-yaml

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• sug: qcat-examples

  demultiplexing Oxford Nanopore reads from FASTQ files (examples)

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