Пакет: cnvkit (0.9.9-2 и другие)

[ Источник: cnvkit  ]

Copy number variant detection from targeted DNA sequencing

A command-line toolkit and Python library for detecting copy number variants and alterations genome-wide from targeted DNA sequencing. It is designed for use with hybrid capture, including both whole-exome and custom target panels, and short-read sequencing platforms such as Illumina and Ion Torrent.

Другие пакеты, относящиеся к cnvkit

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-biopython

  Python3 library for bioinformatics

• dep: python3-joblib

  tools to provide lightweight pipelining in Python

• dep: python3-matplotlib

  Python based plotting system in a style similar to Matlab (Python 3)

• dep: python3-networkx

  tool to create, manipulate and study complex networks (Python3)

• dep: python3-numpy

  Fast array facility to the Python 3 language

• dep: python3-pandas

  data structures for "relational" or "labeled" data

• dep: python3-pomegranate

  Fast, flexible and easy to use probabilistic modelling

• dep: python3-pyfaidx

  efficient random access to fasta subsequences for Python 3

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: python3-reportlab

  ReportLab library to create PDF documents using Python3

• dep: python3-scipy

  scientific tools for Python 3

• dep: python3-sklearn

  Python modules for machine learning and data mining - Python 3

• dep: r-bioc-dnacopy

  R package: DNA copy number data analysis

Загрузка cnvkit

Загрузить для всех доступных архитектур

Архитектура	Версия	Размер пакета	В установленном виде	Файлы
amd64	0.9.9-2+b1	15 064,0 Кб	69 065,0 Кб	[список файлов]
arm64	0.9.9-2+b1	15 068,5 Кб	69 065,0 Кб	[список файлов]
ppc64el	0.9.9-2+b1	15 066,7 Кб	69 065,0 Кб	[список файлов]