Пакет: assemblytics (1.2.1+dfsg-1)

[ Источник: assemblytics  ]

detect and analyze structural variants from a genome assembly

Assemblytics incorporates a unique anchor filtering approach to increase robustness to repetitive elements, and identifies six classes of variants based on their distinct alignment signatures. Assemblytics can be applied both to comparing aberrant genomes, such as human cancers, to a reference, or to identify differences between related species.

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• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-numpy

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• dep: r-base-core

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• dep: r-cran-ggplot2

  implementation of the Grammar of Graphics

• dep: r-cran-plyr

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• dep: r-cran-rcolorbrewer

  GNU R package providing suitable color palettes

• rec: mummer

  Efficient sequence alignment of full genomes

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