Пакет: r-bioc-genomicfeatures (1.50.4+dfsg-1)

[ Источник: r-bioc-genomicfeatures  ]

GNU R tools for making and manipulating transcript centric annotations

A set of tools and methods for making and manipulating transcript centric annotations. With these tools the user can easily download the genomic locations of the transcripts, exons and cds of a given organism, from either the UCSC Genome Browser or a BioMart database (more sources will be supported in the future). This information is then stored in a local database that keeps track of the relationship between transcripts, exons, cds and genes. Flexible methods are provided for extracting the desired features in a convenient format.

Другие пакеты, относящиеся к r-bioc-genomicfeatures

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• dep: r-api-bioc-3.16

  виртуальный пакет, предоставляемый r-bioc-biocgenerics

• dep: r-base-core (>= 4.2.2.20221110-2)

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• dep: r-bioc-annotationdbi (>= 1.41.4)

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• dep: r-bioc-biobase (>= 2.15.1)

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• dep: r-bioc-biocgenerics (>= 0.1.0)

  generic functions for Bioconductor

• dep: r-bioc-biocio

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• dep: r-bioc-biomart (>= 2.17.1)

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• dep: r-bioc-biostrings (>= 2.47.6)

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• dep: r-bioc-genomicranges (>= 1.31.17)

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• dep: r-bioc-iranges (>= 2.13.23)

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• dep: r-bioc-rtracklayer (>= 1.51.5)

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• dep: r-bioc-s4vectors (>= 0.17.29)

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• dep: r-bioc-xvector (>= 0.19.7)

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• dep: r-cran-dbi

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• dep: r-cran-rcurl

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• dep: r-cran-rsqlite (>= 2.0)

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• sug: r-bioc-annotationfilter

  facilities for filtering Bioconductor annotation resources

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-bsgenome

  BioConductor infrastructure for Biostrings-based genome data packages

• sug: r-bioc-ensembldb

  GNU R utilities to create and use an Ensembl based annotation database

• sug: r-bioc-genomicalignments (>= 1.15.7)

  BioConductor representation and manipulation of short genomic alignments

• sug: r-bioc-org.hs.eg.db

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• sug: r-bioc-rsamtools

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• sug: r-cran-knitr

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• sug: r-cran-markdown

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• sug: r-cran-runit

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