Package: r-bioc-geoquery (2.74.0+dfsg-2)

[ Source: r-bioc-geoquery  ]

Get data from NCBI Gene Expression Omnibus (GEO)

The NCBI Gene Expression Omnibus (GEO) is a public repository of microarray data. Given the rich and varied nature of this resource, it is only natural to want to apply BioConductor tools to these data. GEOquery is the bridge between GEO and BioConductor.

Other Packages Related to r-bioc-geoquery

• dep: r-api-4.0

  virtual package provided by r-base-core

• dep: r-api-bioc-3.20

  virtual package provided by r-bioc-biocgenerics

• dep: r-bioc-biobase

  base functions for Bioconductor

• dep: r-bioc-limma

  linear models for microarray data

• dep: r-bioc-s4vectors

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-summarizedexperiment

  BioConductor assay container

• dep: r-cran-curl

  GNU R modern and flexible web client for R

• dep: r-cran-data.table

  GNU R extension of Data.frame

• dep: r-cran-dplyr

  GNU R grammar of data manipulation

• dep: r-cran-httr2

  perform HTTP requests and process the responses in GNU R

• dep: r-cran-magrittr

  GNU R forward-pipe operator

• dep: r-cran-r.utils

  GNU R various programming utilities

• dep: r-cran-readr (>= 1.3.1)

  GNU R package to read rectangular text data

• dep: r-cran-rentrez

  GNU R interface to the NCBI's EUtils API

• dep: r-cran-rvest

  Easily Harvest (Scrape) Web Pages

• dep: r-cran-stringr

  Make it easier to work with strings

• dep: r-cran-tidyr

  GNU R package to easily tidy data

• dep: r-cran-xml2

  GNU R XML parser

• sug: r-bioc-biocgenerics

  generic functions for Bioconductor

• sug: r-cran-covr

  test coverage for GNU R packages

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-markdown

  GNU R package providing R bindings to the Sundown Markdown rendering library

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-testthat

  GNU R testsuite

Download r-bioc-geoquery

Download for all available architectures

Architecture	Package Size	Installed Size	Files
all	13,413.0 kB	13,518.0 kB	[list of files]