Pacote: yanagiba (1.0.0-5)

[ Fonte: yanagiba  ]

filter low quality Oxford Nanopore reads basecalled with Albacore

Yanagiba is used to filter short or low quality Oxford Nanopore reads which have been basecalled with Albacore. It takes fastq.gz and an Albacore summary file as input. If no Albacore summary file is provided attempt to calculate mean qscore from directly from fastq file using NanoMath. Note: Calculated quality scores appear to be lower for reads called with Metrichor, you may need to lower your minqual setting in this case.

Outros pacotes relacionados a yanagiba

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-biopython

  Python3 library for bioinformatics

• dep: python3-nanomath

  simple math function for other Oxford Nanopore processing scripts

• dep: python3-pandas

  data structures for "relational" or "labeled" data

Download de yanagiba

Baixe para todas as arquiteturas disponíveis

Arquitetura	Tamanho do pacote	Tamanho instalado	Arquivos
all	25.0 kB	57.0 kB	[lista de arquivos]