Package: r-bioc-annotate (1.82.0+dfsg-1)

[ Source: r-bioc-annotate  ]

BioConductor annotation for microarrays

This BioConductor module provides methods for annotation for microarrays.

In its current state the basic purpose of annotate is to supply interface routines that support user actions that rely on the different meta-data packages provided through the Bioconductor Project.

Other Packages Related to r-bioc-annotate

• dep: r-api-4.0

  virtual package provided by r-base-core

• dep: r-api-bioc-3.19

  virtual package provided by r-bioc-biocgenerics

• dep: r-bioc-annotationdbi (>= 1.66.0)

  GNU R Annotation Database Interface for BioConductor

• dep: r-bioc-biobase

  base functions for Bioconductor

• dep: r-bioc-biocgenerics (>= 0.50.0)

  generic functions for Bioconductor

• dep: r-cran-dbi

  GNU R package providing a generic database interface

• dep: r-cran-httr

  GNU R tools for working with URLs and HTTP

• dep: r-cran-xml

  GNU R package for XML parsing and generation

• dep: r-cran-xtable

  GNU R coerce data to LaTeX and HTML tables

• sug: r-bioc-biocstyle (>= 2.32.1)

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-biostrings (>= 2.72.1)

  GNU R string objects representing biological sequences

• sug: r-bioc-genefilter (>= 1.86.0)

  methods for filtering genes from microarray experiments

• sug: r-bioc-go.db (>= 3.19.1)

  annotation maps describing the entire Gene Ontology

• sug: r-bioc-iranges (>= 2.38.1)

  GNU R low-level containers for storing sets of integer ranges

• sug: r-bioc-org.hs.eg.db (>= 3.19.1)

  genome-wide annotation for Human

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-runit

  GNU R package providing unit testing framework

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