Pacote: seaview (1:5.0.5-2 e outros)

[ Fonte: seaview  ]

Multiplatform interface for sequence alignment and phylogeny

SeaView is a viewer and editor of multiple sequence alignments, i.e. DNA or protein sequences are positioned each in their own separate line, such that the nucleotide/amino acid at a particular position (column) is presumed to have the same biochemical property.

SeaView reads and writes various file formats (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE, Newick) of DNA and protein sequences and of phylogenetic trees. Alignments can be manually edited. It drives the programs Muscle or Clustal Omega for multiple sequence alignment, and also allows one to use any external alignment algorithm able to read and write FASTA-formatted files. It computes phylogenetic trees by parsimony using PHYLIP's dnapars/protpars algorithm, by distance with NJ or BioNJ algorithms on a variety of evolutionary distances, or by maximum likelihood using the program PhyML 3.0.

SeaView draws phylogenetic trees on screen or PostScript files, and allows one to download sequences from EMBL/GenBank/UniProt using the Internet.

Etiquetas: Campo: Biologia, Bioinformática, Implementado em: implemented-in::c, implemented-in::c++, Interface de usuário(a): Linha de comando, interface::graphical, interface::x11, Rede: Cliente, Protocolos de rede: Precisa de uma etiqueta extra, Função: role::program, scope::utility, Kit de ferramentas de interface: FLTK, Propósito: Precisa de uma etiqueta extra, use::comparing, use::editing, Impressão, use::viewing, works-with-format::plaintext, Funciona com: works-with::biological-sequence, x11::application

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Download de seaview

Baixe para todas as arquiteturas disponíveis

Arquitetura	Versão	Tamanho do pacote	Tamanho instalado	Arquivos
armhf	1:5.0.5-2+b1	321.7 kB	700.0 kB	[lista de arquivos]