Package: bio-vcf (0.9.5-3)

Links for bio-vcf

Debian Resources:

Download Source Package bio-vcf:

Maintainers:

Debian Med Packaging Team (QA Page, Mail Archive)
Andreas Tille (QA Page)
Nilesh Patra (QA Page)

External Resources:

Homepage [github.com]

Similar packages:

domain specific language (DSL) for processing the VCF format

Bio-vcf provides a domain specific language (DSL) for processing the VCF format. Record named fields can be queried with regular expressions, e.g.

 sample.dp>20 and rec.filter !~ /LowQD/ and rec.tumor.bcount[rec.alt]>4

Bio-vcf is a new generation VCF parser, filter and converter. Bio-vcf is not only very fast for genome-wide (WGS) data, it also comes with a really nice filtering, evaluation and rewrite language and it can output any type of textual data, including VCF header and contents in RDF and JSON.

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Architecture	Package Size	Installed Size	Files
all	28.1 kB	141.0 kB	[list of files]