Pacote: sourmash (4.8.14-3)

[ Fonte: sourmash  ]

tools for comparing DNA sequences with MinHash sketches

Compute MinHash signatures for nucleotide (DNA/RNA) and protein sequences.

MinHash sketches provide a lightweight way to store “signatures” of large DNA or RNA sequence collections, and then compare or search them using a Jaccard index. MinHash sketches can be used to identify samples, find similar samples, identify data sets with shared sequences, and build phylogenetic trees (Ondov et al. 2015).

sourmash provides a command line script, a Python library, and a CPython module for MinHash sketches.

These tools provide functionality previously handled by the 'khmer' package.

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Download de sourmash

Baixe para todas as arquiteturas disponíveis

Arquitetura	Tamanho do pacote	Tamanho instalado	Arquivos
amd64	717.8 kB	2,501.0 kB	[lista de arquivos]
arm64	652.9 kB	2,393.0 kB	[lista de arquivos]
loong64 (porte não oficial)	655.3 kB	2,521.0 kB	[lista de arquivos]
mips64el	697.4 kB	2,986.0 kB	[lista de arquivos]
ppc64el	719.9 kB	2,713.0 kB	[lista de arquivos]
riscv64	695.5 kB	2,286.0 kB	[lista de arquivos]