Package: spoa (4.1.4-2) [debports]
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SIMD partial order alignment tool
Spoa (SIMD POA) is a c++ implementation of the partial order alignment (POA) algorithm (as described in 10.1093/bioinformatics/18.3.452) which is used to generate consensus sequences (as described in 10.1093/bioinformatics/btg109). It supports three alignment modes: local (Smith-Waterman), global (Needleman-Wunsch) and semi-global alignment (overlap).
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Download spoa
Architecture | Package Size | Installed Size | Files |
---|---|---|---|
alpha (unofficial port) | 35.9 kB | 98.0 kB | [list of files] |