Package: biobambam2 (2.0.185+ds-2) [debports]
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tools for early stage alignment file processing
This package contains some tools for processing BAM files, including
bamsormadup: parallel sorting and duplicate marking bamcollate2: reads BAM and writes BAM reordered such that alignment or collated by query name bammarkduplicates: reads BAM and writes BAM with duplicate alignments marked using the BAM flags field bammaskflags: reads BAM and writes BAM while masking (removing) bits from the flags column bamrecompress: reads BAM and writes BAM with a defined compression setting. This tool is capable of multi-threading. bamsort: reads BAM and writes BAM resorted by coordinates or query name bamtofastq: reads BAM and writes FastQ; output can be collated or uncollated by query name
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Download biobambam2
Architecture | Package Size | Installed Size | Files |
---|---|---|---|
alpha (unofficial port) | 9,150.3 kB | 73,920.0 kB | [list of files] |