Pacote: r-bioc-gviz (1.26.4-1)

[ Fonte: r-bioc-gviz  ]

Plotting data and annotation information along genomic coordinates

Genomic data analyses requires integrated visualization of known genomic information and new experimental data. Gviz uses the biomaRt and the rtracklayer packages to perform live annotation queries to Ensembl and UCSC and translates this to e.g. gene/transcript structures in viewports of the grid graphics package. This results in genomic information plotted together with your data.

Outros pacotes relacionados a r-bioc-gviz

• dep: r-api-3.5

  pacote virtual fornecido por r-base-core

• dep: r-api-bioc-3.8

  pacote virtual fornecido por r-bioc-biocgenerics

• dep: r-base-core (>= 3.5.1.20181215-1)

  GNU R core of statistical computation and graphics system

• dep: r-bioc-annotationdbi (>= 1.27.5)

  GNU R Annotation Database Interface for BioConductor

• dep: r-bioc-biobase (>= 2.15.3)

  base functions for Bioconductor

• dep: r-bioc-biocgenerics (>= 0.11.3)

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• dep: r-bioc-biomart (>= 2.11.0)

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• dep: r-bioc-biostrings (>= 2.33.11)

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• dep: r-bioc-biovizbase (>= 1.13.8)

  GNU R basic graphic utilities for visualization of genomic data

• dep: r-bioc-bsgenome (>= 1.33.1)

  BioConductor infrastructure for Biostrings-based genome data packages

• dep: r-bioc-genomeinfodb (>= 1.1.3)

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• dep: r-bioc-genomicalignments (>= 1.1.16)

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• dep: r-bioc-genomicfeatures (>= 1.17.22)

  GNU R tools for making and manipulating transcript centric annotations

• dep: r-bioc-genomicranges (>= 1.17.20)

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges (>= 1.99.18)

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• dep: r-bioc-rsamtools (>= 1.17.28)

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• dep: r-bioc-rtracklayer (>= 1.25.13)

  GNU R interface to genome browsers and their annotation tracks

• dep: r-bioc-s4vectors (>= 0.9.25)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-xvector (>= 0.5.7)

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• dep: r-cran-digest (>= 0.6.8)

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• dep: r-cran-lattice

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• dep: r-cran-latticeextra (>= 0.6-26)

  GNU R package of additional graphical displays based on lattice

• dep: r-cran-matrixstats (>= 0.8.14)

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• dep: r-cran-rcolorbrewer

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• sug: r-cran-xtable

  GNU R coerce data to LaTeX and HTML tables

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