Pacote: pbalign (0.3.2-1)

[ Fonte: pbalign  ]

map Pacific Biosciences reads to reference DNA sequences

pbalign aligns PacBio reads to reference sequences, filters aligned reads according to user-specific filtering criteria, and converts the output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5) format.

This package is part of the SMRTAnalysis suite.

Outros pacotes relacionados a pbalign

• dep: blasr (>= 5.3+0)

  mapping single-molecule sequencing reads

• dep: python

  linguagem interativa de alto nível orientada a objetos (versão Python2)

• dep: python-pbalign (= 0.3.2-1)

  map Pacific Biosciences reads to reference DNA sequences (Python2)

• dep: python-pkg-resources

  pacote de descoberta e acesso a recursos utilizando o pkg_resources

• rec: hdf5-tools

  ferramentas de execução para o Hierarchical Data Format 5 (HDF5)

• rec: python-pbh5tools

  tools for manipulating Pacific Biosciences HDF5 files -- Python 2 library

• sug: bowtie2

  ultrafast memory-efficient short read aligner

• sug: gmap

  spliced and SNP-tolerant alignment for mRNA and short reads

• sug: pbalign-doc

  documentation for pbalign

Download de pbalign

Baixe para todas as arquiteturas disponíveis

Arquitetura	Tamanho do pacote	Tamanho instalado	Arquivos
all	9.3 kB	44.0 kB	[lista de arquivos]