Pacote: libtfbs-perl (0.7.1-2 e outros)

[ Fonte: libtfbs-perl  ]

scanning DNA sequence with a position weight matrix

The TFBS perl modules comprise a set of routines to interact with the Transfac and Jaspar databases that describe a special family of proteins, the transcription factors. These bind to genomic DNA to initiate (or prevent) the readout of a gene. Once multiple binding sites are known for a transcription factor, these are gathered in a single file and are aligned in order to find position-specific characteristica that might be used to predict such binding events in novel DNA sequences.

If you use TFBS in your work, please cite "Lenhard B., Wasserman W.W. (2002) TFBS: Computational framework for transcription factor binding site analysis. Bioinformatics 18:1135-1136".

Note: the TFBS perl module is no longer under active development. All the functionality can be found in the TFBSTools Bioconductor package; users are highly encouraged to switch. <http://bioconductor.org/packages/TFBSTools/>

Etiquetas: Desenvolvimento de software: Desenvolvimento Perl, Bibliotecas, Campo: field::biology, field::biology:bioinformatics, Implementado em: C, implemented-in::perl, interface::commandline, Função: Biblioteca de desenvolvimento, Programa

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Download de libtfbs-perl

Baixe para todas as arquiteturas disponíveis

Arquitetura	Versão	Tamanho do pacote	Tamanho instalado	Arquivos
amd64	0.7.1-2+b1	236.9 kB	834.0 kB	[lista de arquivos]
arm64	0.7.1-2+b1	237.0 kB	834.0 kB	[lista de arquivos]
armhf	0.7.1-2+b1	236.1 kB	830.0 kB	[lista de arquivos]
i386	0.7.1-2+b1	237.5 kB	838.0 kB	[lista de arquivos]