Pacote: clonalframeml (1.11-3)

[ Fonte: clonalframeml  ]

Efficient Inference of Recombination in Whole Bacterial Genomes

ClonalFrameML is a software package that performs efficient inference of recombination in bacterial genomes. ClonalFrameML was created by Xavier Didelot and Daniel Wilson. ClonalFrameML can be applied to any type of aligned sequence data, but is especially aimed at analysis of whole genome sequences. It is able to compare hundreds of whole genomes in a matter of hours on a standard Desktop computer. There are three main outputs from a run of ClonalFrameML: a phylogeny with branch lengths corrected to account for recombination, an estimation of the key parameters of the recombination process, and a genomic map of where recombination took place for each branch of the phylogeny.

ClonalFrameML is a maximum likelihood implementation of the Bayesian software ClonalFrame which was previously described by Didelot and Falush (2007). The recombination model underpinning ClonalFrameML is exactly the same as for ClonalFrame, but this new implementation is a lot faster, is able to deal with much larger genomic dataset, and does not suffer from MCMC convergence issues

Outros pacotes relacionados a clonalframeml

• dep: libc6 (>= 2.23)

  GNU Biblioteca C: Bibliotecas compartilhadas
  também um pacote virtual fornecido por libc6-udeb

• dep: libgcc1 (>= 1:3.0) [não armhf]

  Biblioteca de suporte GCC

  dep: libgcc1 (>= 1:3.5) [armhf]

• dep: libstdc++6 (>= 5.2)

  Biblioteca C++ padrão da GNU v3

Download de clonalframeml

Baixe para todas as arquiteturas disponíveis

Arquitetura	Tamanho do pacote	Tamanho instalado	Arquivos
amd64	92.4 kB	249.0 kB	[lista de arquivos]
arm64	78.4 kB	209.0 kB	[lista de arquivos]
armhf	74.9 kB	152.0 kB	[lista de arquivos]
i386	92.3 kB	248.0 kB	[lista de arquivos]