Package: r-bioc-bsgenome (1.58.0-1)

[ Source: r-bioc-bsgenome  ]

BioConductor infrastructure for Biostrings-based genome data packages

This BioConductor module provides some basic infrastructure for Biostrings-based genome data packages.

Other Packages Related to r-bioc-bsgenome

• dep: r-api-4.0

  virtual package provided by r-base-core

• dep: r-api-bioc-3.12

  virtual package provided by r-bioc-biocgenerics

• dep: r-base-core (>= 4.0.3-1)

  GNU R core of statistical computation and graphics system

• dep: r-bioc-biocgenerics (>= 0.13.8)

  generic functions for Bioconductor

• dep: r-bioc-biostrings (>= 2.47.6)

  GNU R string objects representing biological sequences

• dep: r-bioc-genomeinfodb (>= 1.25.6)

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicranges (>= 1.31.10)

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges (>= 2.13.16)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-rsamtools

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• dep: r-bioc-rtracklayer (>= 1.39.7)

  GNU R interface to genome browsers and their annotation tracks

• dep: r-bioc-s4vectors (>= 0.17.28)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-xvector (>= 0.29.3)

  BioConductor representation and manpulation of external sequences

• dep: r-cran-matrixstats

  GNU R methods that apply to rows and columns of a matrix

• rec: r-bioc-biovizbase (>= 1.14.0)

  GNU R basic graphic utilities for visualization of genomic data

• sug: r-bioc-biobase

  base functions for Bioconductor

• sug: r-cran-biocmanager

  access the Bioconductor project package repository

• sug: r-cran-runit

  GNU R package providing unit testing framework

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