[ Source: spoa ]
Package: spoa (4.0.7+ds-1 and others)
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- Homepage [github.com]
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SIMD partial order alignment tool
Spoa (SIMD POA) is a c++ implementation of the partial order alignment (POA) algorithm (as described in 10.1093/bioinformatics/18.3.452) which is used to generate consensus sequences (as described in 10.1093/bioinformatics/btg109). It supports three alignment modes: local (Smith-Waterman), global (Needleman-Wunsch) and semi-global alignment (overlap).
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- dep: libspoa7.0.0 (>= 4.0.7+ds)
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Download spoa
| Architecture | Version | Package Size | Installed Size | Files |
|---|---|---|---|---|
| ppc64el | 4.0.7+ds-1+b1 | 38.0 kB | 99.0 kB | [list of files] |