Package: bowtie2 (2.4.2-2 and others)
Links for bowtie2
Debian Resources:
Download Source Package bowtie2:
Maintainers:
- Debian Med Packaging Team (QA Page, Mail Archive)
- Alexandre Mestiashvili (QA Page)
- Andreas Tille (QA Page)
External Resources:
- Homepage [bowtie-bio.sourceforge.net]
Similar packages:
ultrafast memory-efficient short read aligner
is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes.
Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes
Other Packages Related to bowtie2
|
|
|
|
-
- dep: libc6 (>= 2.29)
- GNU Biblioteca C: Bibliotecas compartilhadas
also a virtual package provided by libc6-udeb
-
- dep: libgcc-s1 (>= 3.0)
- Biblioteca de suporte GCC
-
- dep: libstdc++6 (>= 9)
- Biblioteca C++ padrão da GNU v3
-
- dep: perl
- Linguagem de extração e relatórios prática de Larry Wall
-
- dep: python3
- linguagem orientada a objetos de alto nível e interativa (versão padrão da python3)
-
- dep: zlib1g (>= 1:1.2.6)
- biblioteca de compressão - runtime (tempo de execução)
-
- sug: bowtie2-examples
- Examples for bowtie2
Download bowtie2
Architecture | Version | Package Size | Installed Size | Files |
---|---|---|---|---|
ppc64el | 2.4.2-2+b3 | 1,386.5 kB | 5,563.0 kB | [list of files] |