Package: igv (2.6.3+dfsg-3) [non-free]

[ Source: igv  ]

Integrative Genomics Viewer

The Integrative Genomics Viewer (IGV) is a high-performance viewer that efficiently handles large heterogeneous data sets, while providing a smooth and intuitive user experience at all levels of genome resolution. A key characteristic of IGV is its focus on the integrative nature of genomic studies, with support for both array-based and next-generation sequencing data, and the integration of clinical and phenotypic data. Although IGV is often used to view genomic data from public sources, its primary emphasis is to support researchers who wish to visualize and explore their own data sets or those from colleagues. To that end, IGV supports flexible loading of local and remote data sets, and is optimized to provide high-performance data visualization and exploration on standard desktop systems.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::java, interface::commandline, User Interface: Graphical User Interface, interface::x11, network::client, Network Protocol: HTTP, Role: Program, Scope: scope::utility, use::viewing, Works with: Biological Sequence, X Window System: Application

Other Packages Related to igv

• dep: default-jre

  ambiente de execução Java padrão ou compatível com Java

• dep: libbatik-java

  xml.apache.org SVG Library

• dep: libcommons-io-java

  Common useful IO related classes

• dep: libcommons-logging-java

  common wrapper interface for several logging APIs

• dep: libcommons-math-java

  Java lightweight mathematics and statistics components

• dep: libgoogle-gson-java

  Converts Java objects into their JSON representation

• dep: libguava-java

  Conjunto das bibliotecas comuns da Google para Java

• dep: libhtsjdk-java

  Java API for high-throughput sequencing data (HTS) formats

• dep: libjaxb-api-java

  Java Architecture for XML Binding API

• dep: libjcommon-java

  General Purpose library for Java

• dep: libjfreechart-java

  Chart library for Java

• dep: libjgrapht0.8-java

  mathematical graph theory library for Java

• dep: libjide-oss-java

  extensible Swing component library for Java

• dep: liblog4j1.2-java

  Logging library for java

• dep: liblog4j2-java

  Apache Log4j - Logging Framework for Java

• dep: libnb-absolutelayout-java

  Java LayoutManager to allow placement in absolute positions

• dep: libswing-layout-java

  Extensions to Swing layout

• dep: libxml-commons-external-java

  XML Commons external code - DOM, SAX, and JAXP, etc

• rec: libmariadb-java

  Java database driver for MariaDB and MySQL

Download igv

Download for all available architectures

Architecture	Package Size	Installed Size	Files
all	3,305.1 kB	3,649.0 kB	[list of files]