Package: beast-mcmc (1.10.4+dfsg-2)

[ Source: beast-mcmc  ]

Bayesian MCMC phylogenetic inference

BEAST is a cross-platform program for Bayesian MCMC analysis of molecular sequences. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology. BEAST uses MCMC to average over tree space, so that each tree is weighted proportional to its posterior probability. Included is a simple to use user-interface program for setting up standard analyses and a suit of programs for analysing the results.

Other Packages Related to beast-mcmc

• dep: default-jre

  ambiente de execução Java padrão ou compatível com Java

  or java6-runtime

  virtual package provided by default-jre, openjdk-11-jre, openjdk-17-jre

• dep: junit4

  infraestrutura de testes de regressão JUnit para Java

• dep: libcolt-free-java

  scalable scientific and technical computing in Java

• dep: libcommons-math-java

  Java lightweight mathematics and statistics components

• dep: libhmsbeagle-java (>= 3.1.2~)

  High-performance lib for Bayesian and Maximum Likelihood phylogenetics (java)

• dep: libitext1-java

  Java Library to generate PDF on the Fly

• dep: libjam-java

  Java applications look and behave like native applications

• dep: libjdom1-java

  lightweight and fast library using XML

• dep: libjebl2-java

  Java Evolutionary Biology Library

• dep: libmpj-java

  Java library for parallel applications for multicore processors and clusters

• dep: libmtj-java

  Java library for developing numerical applications

• dep: libnetlib-java

  collection of mission-critical software components for linear algebra systems

• dep: libnucleotidelikelihoodcore0 (<< 1.10.4+dfsg-2.1~)

  implementation of LikelihoodCore for nucleotides used by beast-mcmc

  dep: libnucleotidelikelihoodcore0 (>= 1.10.4+dfsg-2)

Download beast-mcmc

Download for all available architectures

Architecture	Package Size	Installed Size	Files
all	5,566.3 kB	10,810.0 kB	[list of files]