Pacote: samblaster (0.1.26-4)

[ Fonte: samblaster  ]

marks duplicates, extracts discordant/split reads

Current "next-generation" sequencing technologies cannot tell what exact sequence they will be reading. They take what is available. And if some sequences are read very often, then this needs some extra biomedical thinking. The genome could for instance be duplicated.

samblaster is a fast and flexible program for marking duplicates in read-id grouped paired-end SAM files. It can also optionally output discordant read pairs and/or split read mappings to separate SAM files, and/or unmapped/clipped reads to a separate FASTQ file. When marking duplicates, samblaster will require approximately 20MB of memory per 1M read pairs.

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Download de samblaster

Baixe para todas as arquiteturas disponíveis

Arquitetura	Tamanho do pacote	Tamanho instalado	Arquivos
amd64	24.3 kB	62.0 kB	[lista de arquivos]
arm64	23.1 kB	85.0 kB	[lista de arquivos]
armel	22.8 kB	85.0 kB	[lista de arquivos]
armhf	22.8 kB	85.0 kB	[lista de arquivos]
i386	25.1 kB	61.0 kB	[lista de arquivos]
mips64el	25.9 kB	89.0 kB	[lista de arquivos]
mipsel	25.9 kB	87.0 kB	[lista de arquivos]
ppc64el	26.5 kB	86.0 kB	[lista de arquivos]
s390x	22.6 kB	57.0 kB	[lista de arquivos]