[ Pakiet źródłowy: picard-tools ]
Pakiet: picard-tools (3.1.1+dfsg-1)
Odnośniki dla picard-tools
Zasoby systemu Debian:
- Raporty o błędach
- Developer Information
- Dziennik zmian w systemie Debian
- Informacje nt. praw autorskich
- Śledzenie łatek systemu Debian
Pobieranie pakietu źródłowego picard-tools:
- [picard-tools_3.1.1+dfsg-1.dsc]
- [picard-tools_3.1.1+dfsg.orig.tar.xz]
- [picard-tools_3.1.1+dfsg-1.debian.tar.xz]
Opiekunowie:
- Debian Med Packaging Team (Strona QA, Archiwum e-mail)
- Charles Plessy (Strona QA)
- Olivier Sallou (Strona QA)
- Vincent Danjean (Strona QA)
- Andreas Tille (Strona QA)
- Steffen Moeller (Strona QA)
- Pierre Gruet (Strona QA)
Zasoby zewnętrzne:
- Strona internetowa [broadinstitute.github.io]
Podobne pakiety:
Command line tools to manipulate SAM and BAM files
SAM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments. Picard Tools includes these utilities to manipulate SAM and BAM files:
AddCommentsToBam FifoBuffer
AddOrReplaceReadGroups FilterSamReads
BaitDesigner FilterVcf
BamIndexStats FixMateInformation
GatherBamFiles
BedToIntervalList GatherVcfs
BuildBamIndex GenotypeConcordance
CalculateHsMetrics IlluminaBasecallsToFastq
CalculateReadGroupChecksum IlluminaBasecallsToSam
CheckIlluminaDirectory LiftOverIntervalList
CheckTerminatorBlock LiftoverVcf
CleanSam MakeSitesOnlyVcf
CollectAlignmentSummaryMetrics MarkDuplicates
CollectBaseDistributionByCycle MarkDuplicatesWithMateCigar
CollectGcBiasMetrics MarkIlluminaAdapters
CollectHiSeqXPfFailMetrics MeanQualityByCycle
CollectIlluminaBasecallingMetrics MergeBamAlignment
CollectIlluminaLaneMetrics MergeSamFiles
CollectInsertSizeMetrics MergeVcfs
CollectJumpingLibraryMetrics NormalizeFasta
CollectMultipleMetrics PositionBasedDownsampleSam
CollectOxoGMetrics QualityScoreDistribution
CollectQualityYieldMetrics RenameSampleInVcf
CollectRawWgsMetrics ReorderSam
CollectRnaSeqMetrics ReplaceSamHeader
CollectRrbsMetrics RevertOriginalBaseQualitiesAndAddMateCigar
CollectSequencingArtifactMetrics RevertSam
CollectTargetedPcrMetrics SamFormatConverter
CollectVariantCallingMetrics SamToFastq
CollectWgsMetrics ScatterIntervalsByNs
CompareMetrics SortSam
CompareSAMs SortVcf
ConvertSequencingArtifactToOxoG SplitSamByLibrary
CreateSequenceDictionary SplitVcfs
DownsampleSam UpdateVcfSequenceDictionary
EstimateLibraryComplexity ValidateSamFile
ExtractIlluminaBarcodes VcfFormatConverter
ExtractSequences VcfToIntervalList
FastqToSam ViewSam
Inne pakiety związane z picard-tools
|
|
|
|
-
- dep: default-jre
- Standardowe lub kompatybilne środowisko uruchomieniowe Javy
- lub java6-runtime
- pakiet wirtualny udostępniany przez default-jre, openjdk-17-jre, openjdk-21-jre
-
- dep: libpicard-java (= 3.1.1+dfsg-1)
- Java library to manipulate SAM and BAM files
Pobieranie picard-tools
| Architektura | Rozmiar pakietu | Rozmiar po instalacji | Pliki |
|---|---|---|---|
| all | 304,0 KiB | 329,0 KiB | [lista plików] |