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Pakiet źródłowy: snpeff (5.2.b+dfsg-1)

Odnośniki dla snpeff

Zasoby systemu Debian:

Opiekunowie:

Zasoby zewnętrzne:

Strona internetowa [pcingola.github.io]

Z tego pakietu źródłowego zbudowano następujące pakiety binarne:

libsnpeff-java: genetic variant annotation and effect prediction toolbox - lib
libsnpeff-java-doc: Documentation for Snp Effect
snpeff: genetic variant annotation and effect prediction toolbox - tool

Inne pakiety związane z snpeff

build-depends

build-depends-indep

adep: debhelper-compat (= 13)

Pakiet niedostępny
adep: javahelper

Helper scripts for packaging Java programs
adep: default-jdk

Standard Java or Java compatible Development Kit
adep: default-jdk-doc

Standard Java or Java compatible Development Kit (documentation)
adep: maven-debian-helper

Helper tools for building Debian packages with Maven
adep: libmaven-assembly-plugin-java

Maven Assembly Plugin
adep: libtrove3-java

high performance collections for java
adep: libhtsjdk-java

Java API for high-throughput sequencing data (HTS) formats
adep: libbiojava6-java

Java API to biological data and applications (version 6)
adep: junit5

JUnit regression test framework for Java
adep: libcommons-codec-java

Kodery i dekodery takie jak: Base64 i hexadecimal codec
adep: libcommons-io-java

Common useful IO related classes
adep: libcommons-cli-java

Command line arguments and options parsing library
adep: libcommons-math3-java

Java lightweight mathematics and statistics components
adep: libfreemarker-java

template engine written in Java
adep: libjaxb-api-java

Java Architecture for XML Binding API
adep: libmaven-javadoc-plugin-java

Maven Javadoc Plugin
adep: libbiojava6-java-doc

[Biology] Documentation for BioJava 6
adep: libtrove3-java-doc

high performance collections for java
adep: libcharts4j-java

free, lightweight charts and graphs Java API
adep: libapfloat-java

high performance arbitrary precision arithmetic library for Java
adep: libdistlib-java

Java library of statistical distribution functions

Download snpeff

Plik	Rozmiar (w KiB)	Suma kontrolna MD5
snpeff_5.2.b+dfsg-1.dsc	2,5 KiB	e9c45ee1b72bfeef586599fd96ca620a
snpeff_5.2.b+dfsg.orig.tar.xz	130 533,9 KiB	c289508445dc23089f5a1cea241edda4
snpeff_5.2.b+dfsg-1.debian.tar.xz	13,9 KiB	3ceebe8f515e99aa2040ef81d69f7835

Repozytorium kodu źródłowego Debiana (VCS: Git): https://salsa.debian.org/med-team/snpeff.git
Repozytorium kodu źródłowego Debiana (do przeglądania): https://salsa.debian.org/med-team/snpeff