Pakiet: vcfanno (0.3.5+ds-2) [debports]

[ Pakiet źródłowy:  ]

annotate a VCF with other VCFs/BEDs/tabixed files

Vcfanno allows you to quickly annotate your VCF with any number of INFO fields from any number of VCFs or BED files. It uses a simple conf file to allow the user to specify the source annotation files and fields and how they will be added to the info of the query VCF.

  * For VCF, values are pulled by name from the INFO field with special
    cases of ID and FILTER to pull from those VCF columns.
  * For BED, values are pulled from (1-based) column number.
  * For BAM, depth (count), "mapq" and "seq" are currently supported.

Vcfanno is written in go and it supports custom user-scripts written in Lua. It can annotate more than 8000 variants per second with 34 annotations from 9 files on a modest laptop and over 30K variants per second using 12 processes on a server.

Inne pakiety związane z vcfanno

• dep: libc6 (>= 2.34)

  Biblioteka GNU C: biblioteki współdzielone
  również pakiet wirtualny udostępniany przez libc6-udeb

• dep: libgcc-s1 (>= 3.3.1)

  Biblioteka wspomagająca GCC

• dep: libgo22

  Runtime library for GNU Go applications

Pobieranie vcfanno

Pobierz dla wszystkich dostępnych architektur

Architektura	Rozmiar pakietu	Rozmiar po instalacji	Pliki
x32 (port nieoficjalny)	647,4 KiB	2 660,0 KiB	[lista plików]