Pakiet: cat-bat (5.3-2) [debports]

[ Pakiet źródłowy:  ]

taxonomic classification of contigs and metagenome-assembled genomes (MAGs)

Contig Annotation Tool (CAT) and Bin Annotation Tool (BAT) are pipelines for the taxonomic classification of long DNA sequences and metagenome assembled genomes (MAGs/bins) of both known and (highly) unknown microorganisms, as generated by contemporary metagenomics studies. The core algorithm of both programs involves gene calling, mapping of predicted ORFs against the nr protein database, and voting-based classification of the entire contig / MAG based on classification of the individual ORFs. CAT and BAT can be run from intermediate steps if files are formatted appropriately.

Inne pakiety związane z cat-bat

• dep: diamond-aligner

  accelerated BLAST compatible local sequence aligner

• dep: prodigal

  Microbial (bacterial and archaeal) gene finding program

• dep: python3

  Interaktywny, wysokopoziomowy i obiektowy język programowania (domyślna wersja Python 3)

Pobieranie cat-bat

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Architektura	Rozmiar pakietu	Rozmiar po instalacji	Pliki
sparc64 (port nieoficjalny)	38,5 KiB	199,0 KiB	[lista plików]