Pakiet: r-bioc-organismdbi (1.46.0+dfsg-1)

[ Pakiet źródłowy: r-bioc-organismdbi  ]

smooth interfacing of different database packages

The package enables a simple unified interface to several annotation packages each of which has its own schema by taking advantage of the fact that each of these packages implements a select methods.

Inne pakiety związane z r-bioc-organismdbi

• dep: r-api-4.0

  pakiet wirtualny udostępniany przez r-base-core

• dep: r-api-bioc-3.19

  pakiet wirtualny udostępniany przez r-bioc-biocgenerics

• dep: r-bioc-annotationdbi (>= 1.33.15)

  GNU R Annotation Database Interface for BioConductor

• dep: r-bioc-biobase

  base functions for Bioconductor

• dep: r-bioc-biocgenerics (>= 0.15.10)

  generic functions for Bioconductor

• dep: r-bioc-genomicfeatures (>= 1.39.4)

  GNU R tools for making and manipulating transcript centric annotations

• dep: r-bioc-genomicranges (>= 1.31.13)

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-graph

  handle graph data structures for BioConductor

• dep: r-bioc-iranges

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-rbgl

  R interface to the graph algorithms contained in the BOOST library

• dep: r-bioc-s4vectors

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-txdbmaker

  Tools for making TxDb objects from genomic annotations

• dep: r-cran-biocmanager

  access the Bioconductor project package repository

• dep: r-cran-dbi

  GNU R package providing a generic database interface

• sug: r-bioc-annotationhub (>= 3.12.0)

  GNU R client to access AnnotationHub resources

• sug: r-bioc-biocstyle (>= 2.32.1)

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-biomart (>= 2.60.1)

  GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)

• sug: r-bioc-rtracklayer (>= 1.64.0)

  GNU R interface to genome browsers and their annotation tracks

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-rmariadb

  Database Interface and 'MariaDB' Driver

• sug: r-cran-runit

  GNU R package providing unit testing framework

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