Pakiet: python3-loompy (3.0.7+dfsg-3)

[ Pakiet źródłowy: python-loompy  ]

access loom formatted files for bioinformatics

Loom is an efficient file format for very large omics datasets, consisting of a main matrix, optional additional layers, a variable number of row and column annotations. Loom also supports sparse graphs. Loom files are used to store single-cell gene expression data: the main matrix contains the actual expression values (one column per cell, one row per gene); row and column annotations contain metadata for genes and cells, such as Name, Chromosome, Position (for genes), and Strain, Sex, Age (for cells).

Loom files (.loom) are created in the HDF5 file format, which supports an internal collection of numerical multidimensional datasets. HDF5 is supported by many computer languages, including Java, MATLAB, Mathematica, Python, R, and Julia. .loom files are accessible from any language that supports HDF5.

Inne pakiety związane z python3-loompy

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-click

  Command-Line Interface Creation Kit - Python 3.x

• dep: python3-h5py

  general-purpose Python interface to hdf5

• dep: python3-numba

  native machine code compiler for Python 3

• dep: python3-numpy

  Szybkie zarządzanie tablicami w języku Python (Python 3)

• dep: python3-numpy-groupies

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• dep: python3-pandas

  data structures for "relational" or "labeled" data

• dep: python3-pkg-resources

  Wykrywanie pakietów i udostępnianie zasobów przy użyciu pkg_resources

• dep: python3-scipy

  Narzędzia naukowe dla Pythona 3

Pobieranie python3-loompy

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Architektura	Rozmiar pakietu	Rozmiar po instalacji	Pliki
amd64	39,8 KiB	189,0 KiB	[lista plików]
arm64	39,8 KiB	189,0 KiB	[lista plików]
mips64el	39,9 KiB	189,0 KiB	[lista plików]
ppc64el	39,9 KiB	189,0 KiB	[lista plików]
s390x	39,8 KiB	189,0 KiB	[lista plików]