Pakiet: r-bioc-genomicranges (1.56.2+dfsg-1)

[ Pakiet źródłowy: r-bioc-genomicranges  ]

BioConductor representation and manipulation of genomic intervals

The ability to efficiently store genomic annotations and alignments is playing a central role when it comes to analyze high-throughput sequencing data (a.k.a. NGS data). The package defines general purpose containers for storing genomic intervals as well as more specialized containers for storing alignments against a reference genome.

Inne pakiety związane z r-bioc-genomicranges

• dep: libc6 (>= 2.17)

  Biblioteka GNU C: biblioteki współdzielone
  również pakiet wirtualny udostępniany przez libc6-udeb

• dep: r-api-4.0

  pakiet wirtualny udostępniany przez r-base-core

• dep: r-api-bioc-3.19

  pakiet wirtualny udostępniany przez r-bioc-biocgenerics

• dep: r-bioc-biocgenerics (>= 0.37.0)

  generic functions for Bioconductor

• dep: r-bioc-genomeinfodb (>= 1.15.2)

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-iranges (>= 2.37.1)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-s4vectors (>= 0.27.12)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-xvector (>= 0.29.2)

  BioConductor representation and manpulation of external sequences

• sug: r-bioc-annotate

  BioConductor annotation for microarrays

• sug: r-bioc-annotationdbi

  GNU R Annotation Database Interface for BioConductor

• sug: r-bioc-annotationhub

  GNU R client to access AnnotationHub resources

• sug: r-bioc-biobase

  base functions for Bioconductor

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-biostrings (>= 2.25.3)

  GNU R string objects representing biological sequences

• sug: r-bioc-bsgenome

  BioConductor infrastructure for Biostrings-based genome data packages

• sug: r-bioc-deseq2

  R package for RNA-Seq Differential Expression Analysis

• sug: r-bioc-dexseq

  GNU R inference of differential exon usage in RNA-Seq

• sug: r-bioc-edger

  Empirical analysis of digital gene expression data in R

• sug: r-bioc-genomicalignments

  BioConductor representation and manipulation of short genomic alignments

• sug: r-bioc-genomicfeatures

  GNU R tools for making and manipulating transcript centric annotations

• sug: r-bioc-gviz

  Plotting data and annotation information along genomic coordinates

• sug: r-bioc-keggrest

  GNU R client-side REST access to KEGG

• sug: r-bioc-rsamtools (>= 1.13.53)

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• sug: r-bioc-rtracklayer

  GNU R interface to genome browsers and their annotation tracks

• sug: r-bioc-summarizedexperiment (>= 0.1.5)

  BioConductor assay container

• sug: r-bioc-txdbmaker

  Tools for making TxDb objects from genomic annotations

• sug: r-bioc-variantannotation

  BioConductor annotation of genetic variants

• sug: r-cran-digest

  GNU R package for 'hash digest' of R data structures

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-matrix

  GNU R package of classes for dense and sparse matrices

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-runit

  GNU R package providing unit testing framework

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