Pakiet: r-bioc-scrnaseq (2.18.0+ds-1)

[ Pakiet źródłowy: r-bioc-scrnaseq  ]

Collection of Public Single-Cell RNA-Seq Datasets

Gene-level counts for a collection of public scRNA-seq datasets, provided as SingleCellExperiment objects with cell- and gene-level metadata.

Inne pakiety związane z r-bioc-scrnaseq

• dep: r-api-4.0

  pakiet wirtualny udostępniany przez r-base-core

• dep: r-api-bioc-3.19

  pakiet wirtualny udostępniany przez r-bioc-biocgenerics

• dep: r-bioc-alabaster.base (>= 1.4.2+ds-2~0exp3)

  Save Bioconductor Objects To File

• dep: r-bioc-alabaster.matrix

  Load and Save matrices, arrays, and similar objects from files

• dep: r-bioc-alabaster.sce

  Load and Save SingleCellExperiment from File

• dep: r-bioc-annotationdbi (>= 1.66.0)

  GNU R Annotation Database Interface for BioConductor

• dep: r-bioc-annotationhub (>= 3.12.0)

  GNU R client to access AnnotationHub resources

• dep: r-bioc-biocgenerics (>= 0.50.0)

  generic functions for Bioconductor

• dep: r-bioc-delayedarray (>= 0.30.1)

  BioConductor delayed operations on array-like objects

• dep: r-bioc-ensembldb (>= 2.28.0)

  GNU R utilities to create and use an Ensembl based annotation database

• dep: r-bioc-experimenthub (>= 2.12.0)

  BioConductor client to access ExperimentHub resources

• dep: r-bioc-genomicfeatures (>= 1.56.0)

  GNU R tools for making and manipulating transcript centric annotations

• dep: r-bioc-genomicranges (>= 1.56.1)

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-gypsum (>= 1.0.1+ds-2~0exp1)

  Interface to the gypsum REST API

• dep: r-bioc-hdf5array (>= 1.32.0-1~0exp2)

  HDF5 backend for DelayedArray objects

• dep: r-bioc-s4vectors (>= 0.42.1)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-singlecellexperiment (>= 1.26.0)

  S4 Classes for Single Cell Data

• dep: r-bioc-sparsearray (>= 1.4.8)

  efficient in-memory representation of multidimensional sparse arrays

• dep: r-bioc-summarizedexperiment (>= 1.34.0)

  BioConductor assay container

• dep: r-cran-dbi

  GNU R package providing a generic database interface

• dep: r-cran-jsonlite

  Robust, High Performance JSON Parser and Generator for R

• dep: r-cran-matrix

  GNU R package of classes for dense and sparse matrices

• dep: r-cran-rsqlite

  Database Interface R driver for SQLite

• sug: r-bioc-biocstyle (>= 2.32.1)

  standard styles for vignettes and other Bioconductor documents

• sug: r-cran-biocmanager

  access the Bioconductor project package repository

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-testthat

  GNU R testsuite

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