Pakiet: kraken (1.1-3)

[ Pakiet źródłowy: kraken  ]

assigning taxonomic labels to short DNA sequences

Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies. Previous attempts by other bioinformatics software to accomplish this task have often used sequence alignment or machine learning techniques that were quite slow, leading to the development of less sensitive but much faster abundance estimation programs. Kraken aims to achieve high sensitivity and high speed by utilizing exact alignments of k-mers and a novel classification algorithm.

In its fastest mode of operation, for a simulated metagenome of 100 bp reads, Kraken processed over 4 million reads per minute on a single core, over 900 times faster than Megablast and over 11 times faster than the abundance estimation program MetaPhlAn. Kraken's accuracy is comparable with Megablast, with slightly lower sensitivity and very high precision.

Inne pakiety związane z kraken

• dep: jellyfish1

  count k-mers in DNA sequences

• dep: libc6 (>= 2.14) [amd64]

  Biblioteka GNU C: biblioteki współdzielone
  również pakiet wirtualny udostępniany przez libc6-udeb

  dep: libc6 (>= 2.17) [arm64]

  dep: libc6 (>= 2.4) [armhf, i386]

• dep: libgcc1 (>= 1:3.0) [amd64, arm64]

  Biblioteka wspomagająca GCC

  dep: libgcc1 (>= 1:3.5) [armhf]

  dep: libgcc1 (>= 1:4.2) [i386]

• dep: libgomp1 (>= 4.9)

  Biblioteka wspierająca GCC OpenMP (GOMP)

• dep: libstdc++6 (>= 5.2)

  Standardowa biblioteka GNU C++, wersja 3

Pobieranie kraken

Pobierz dla wszystkich dostępnych architektur

Architektura	Rozmiar pakietu	Rozmiar po instalacji	Pliki
amd64	733,3 KiB	1 518,0 KiB	[lista plików]
arm64	727,5 KiB	1 470,0 KiB	[lista plików]
armhf	725,7 KiB	1 404,0 KiB	[lista plików]
i386	739,1 KiB	1 524,0 KiB	[lista plików]