Pakiet: clonalframe (1.2-9)

[ Pakiet źródłowy: clonalframe  ]

inference of bacterial microevolution using multilocus sequence data

ClonalFrame identifies the clonal relationships between the members of a sample, while also estimating the chromosomal position of homologous recombination events that have disrupted the clonal inheritance.

ClonalFrame can be applied to any kind of sequence data, from a single fragment of DNA to whole genomes. It is well suited for the analysis of MLST data, where 7 gene fragments have been sequenced, but becomes progressively more powerful as the sequenced regions increase in length and number up to whole genomes. However, it requires the sequences to be aligned. If you have genomic data that is not aligned, it is recommend to use Mauve which produces alignment of whole bacterial genomes in exactly the format required for analysis with ClonalFrame.

Znaczniki: Zaimplementowane w: C++, Rola: Program

Inne pakiety związane z clonalframe

• dep: libc6 (>= 2.14) [amd64]

  Biblioteka GNU C: biblioteki współdzielone
  również pakiet wirtualny udostępniany przez libc6-udeb

  dep: libc6 (>= 2.17) [arm64]

  dep: libc6 (>= 2.4) [armhf, i386]

• dep: libgcc1 (>= 1:3.0) [nie armhf]

  Biblioteka wspomagająca GCC

  dep: libgcc1 (>= 1:3.5) [armhf]

• dep: libgsl23 (>= 2.5)

  GNU Scientific Library (GSL) -- library package

• dep: libgslcblas0 (>= 2.4)

  GNU Scientific Library (GSL) -- blas library package

• dep: libstdc++6 (>= 5.2)

  Standardowa biblioteka GNU C++, wersja 3

• sug: clonalframeml

  Efficient Inference of Recombination in Whole Bacterial Genomes

Pobieranie clonalframe

Pobierz dla wszystkich dostępnych architektur

Architektura	Rozmiar pakietu	Rozmiar po instalacji	Pliki
amd64	48,6 KiB	127,0 KiB	[lista plików]
arm64	44,0 KiB	115,0 KiB	[lista plików]
armhf	40,7 KiB	82,0 KiB	[lista plików]
i386	52,5 KiB	126,0 KiB	[lista plików]