Pakiet: python3-bcbio (1.2.5-1) [contrib]

[ Pakiet źródłowy: bcbio  ]

library for analysing high-throughput sequencing data

This package installs the Python 3 libraries of the bcbio-nextgen toolkit implementing best-practice pipelines for fully automated high throughput sequencing analysis.

A high-level configuration file specifies inputs and analysis parameters to drive a parallel pipeline that handles distributed execution, idempotent processing restarts and safe transactional steps. The project contributes a shared community resource that handles the data processing component of sequencing analysis, providing researchers with more time to focus on the downstream biology.

Inne pakiety związane z python3-bcbio

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-biopython

  Python3 library for bioinformatics

• dep: python3-cyvcf2

  VCF parser based on htslib (Python 3)

• dep: python3-joblib

  tools to provide lightweight pipelining in Python

• dep: python3-logbook

  logging system for Python that replaces the standard library's module (Python3)

• dep: python3-matplotlib

  Python based plotting system in a style similar to Matlab (Python 3)

• dep: python3-psutil

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• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: python3-requests

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• dep: python3-scipy

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• dep: python3-six

  Python 2 and 3 compatibility library (Python 3 interface)

• dep: python3-tornado

  scalable, non-blocking web server and tools - Python 3 package

• rec: cnvkit

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• rec: gsort

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• rec: libfreetype6

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• rec: lumpy-sv

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• rec: mosdepth

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• rec: multiqc

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• rec: python3-arrow

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• rec: python3-geneimpacts

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• rec: python3-h5py

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• rec: python3-pyvcf

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• rec: python3-seqcluster

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• rec: python3-statsmodels

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• rec: python3-tabulate

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• rec: r-bioc-purecn

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• rec: r-bioc-titancna

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• rec: r-other-wasabi

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• rec: seqan-apps

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• rec: vcfanno

  annotate a VCF with other VCFs/BEDs/tabixed files

• rec: vt

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• sug: bcbio-doc

  Pakiet niedostępny

• sug: python3-bioblend

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• sug: python3-dnapilib

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• sug: python3-msgpack

  Python 3 implementation of MessagePack format

Pobieranie python3-bcbio

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