Pakiet: q2-alignment (2020.11.1-2)

[ Pakiet źródłowy: q2-alignment  ]

QIIME 2 plugin for generating and manipulating alignments

QIIME 2 is a powerful, extensible, and decentralized microbiome analysis package with a focus on data and analysis transparency. QIIME 2 enables researchers to start an analysis with raw DNA sequence data and finish with publication-quality figures and statistical results. Key features:

 * Integrated and automatic tracking of data provenance
 * Semantic type system
 * Plugin system for extending microbiome analysis functionality
 * Support for multiple types of user interfaces (e.g. API, command line,

graphical)

QIIME 2 is a complete redesign and rewrite of the QIIME 1 microbiome analysis pipeline. QIIME 2 will address many of the limitations of QIIME 1, while retaining the features that makes QIIME 1 a powerful and widely-used analysis pipeline.

QIIME 2 currently supports an initial end-to-end microbiome analysis pipeline. New functionality will regularly become available through QIIME 2 plugins. You can view a list of plugins that are currently available on the QIIME 2 plugin availability page. The future plugins page lists plugins that are being developed.

Inne pakiety związane z q2-alignment

• dep: mafft

  Multiple alignment program for amino acid or nucleotide sequences

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-setuptools

  Python3 Distutils Enhancements

• dep: python3-skbio

  Python3 data structures, algorithms, educational resources for bioinformatic

• dep: q2-types

  QIIME 2 plugin defining types for microbiome analysis

• dep: qiime

  Quantitative Insights Into Microbial Ecology

• sug: sina

  Pakiet niedostępny

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