Pakiet: qiime (2020.11.1-1)

[ Pakiet źródłowy: qiime  ]

Quantitative Insights Into Microbial Ecology

QIIME 2 is a powerful, extensible, and decentralized microbiome analysis package with a focus on data and analysis transparency. QIIME 2 enables researchers to start an analysis with raw DNA sequence data and finish with publication-quality figures and statistical results. Key features:

 * Integrated and automatic tracking of data provenance
 * Semantic type system
 * Plugin system for extending microbiome analysis functionality
 * Support for multiple types of user interfaces (e.g. API, command line,

graphical)

QIIME 2 is a complete redesign and rewrite of the QIIME 1 microbiome analysis pipeline. QIIME 2 will address many of the limitations of QIIME 1, while retaining the features that makes QIIME 1 a powerful and widely-used analysis pipeline.

QIIME 2 currently supports an initial end-to-end microbiome analysis pipeline. New functionality will regularly become available through QIIME 2 plugins. You can view a list of plugins that are currently available on the QIIME 2 plugin availability page. The future plugins page lists plugins that are being developed.

Znaczniki: Rola: Program

Inne pakiety związane z qiime

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-bibtexparser

  Python 3 library to parse bibtex files

• dep: python3-dateutil

  powerful extensions to the standard Python 3 datetime module

• dep: python3-decorator

  simplify usage of Python decorators by programmers

• dep: python3-networkx

  tool to create, manipulate and study complex networks (Python3)

• dep: python3-pandas

  data structures for "relational" or "labeled" data

• dep: python3-pyparsing

  alternative to creating and executing simple grammars - Python 3.x

• dep: python3-tzlocal

  tzinfo object for the local timezone

• dep: python3-yaml

  YAML parser and emitter for Python3

• rec: q2-cutadapt

  QIIME 2 plugin to work with adapters in sequence data

• rec: q2-demux

  QIIME 2 plugin for demultiplexing of sequence reads

• rec: q2-feature-classifier

  QIIME 2 plugin supporting taxonomic classification

• rec: q2-feature-table

  QIIME 2 plugin supporting operations on feature tables

• rec: q2-metadata

  QIIME 2 plugin for working with and visualizing Metadata

• rec: q2-quality-filter

  QIIME2 plugin for PHRED-based filtering and trimming

• rec: q2-types

  QIIME 2 plugin defining types for microbiome analysis

• rec: q2cli

  Click-based command line interface for QIIME 2

• rec: q2templates

  Design template package for QIIME 2 Plugins

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