Pakiet: clonalframeml (1.12-1)

[ Pakiet źródłowy: clonalframeml  ]

Efficient Inference of Recombination in Whole Bacterial Genomes

ClonalFrameML is a software package that performs efficient inference of recombination in bacterial genomes. ClonalFrameML was created by Xavier Didelot and Daniel Wilson. ClonalFrameML can be applied to any type of aligned sequence data, but is especially aimed at analysis of whole genome sequences. It is able to compare hundreds of whole genomes in a matter of hours on a standard Desktop computer. There are three main outputs from a run of ClonalFrameML: a phylogeny with branch lengths corrected to account for recombination, an estimation of the key parameters of the recombination process, and a genomic map of where recombination took place for each branch of the phylogeny.

ClonalFrameML is a maximum likelihood implementation of the Bayesian software ClonalFrame which was previously described by Didelot and Falush (2007). The recombination model underpinning ClonalFrameML is exactly the same as for ClonalFrame, but this new implementation is a lot faster, is able to deal with much larger genomic dataset, and does not suffer from MCMC convergence issues

Inne pakiety związane z clonalframeml

• dep: libc6 (>= 2.29)

  Biblioteka GNU C: biblioteki współdzielone
  również pakiet wirtualny udostępniany przez libc6-udeb

• dep: libgcc-s1 (>= 3.0) [nie armel, armhf]

  Biblioteka wspomagająca GCC

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libstdc++6 (>= 9)

  Standardowa biblioteka GNU C++, wersja 3

Pobieranie clonalframeml

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Architektura	Rozmiar pakietu	Rozmiar po instalacji	Pliki
amd64	100,7 KiB	269,0 KiB	[lista plików]
arm64	84,2 KiB	225,0 KiB	[lista plików]
armel	86,9 KiB	240,0 KiB	[lista plików]
armhf	82,7 KiB	168,0 KiB	[lista plików]
i386	98,7 KiB	276,0 KiB	[lista plików]
mips64el	90,9 KiB	287,0 KiB	[lista plików]
mipsel	93,4 KiB	289,0 KiB	[lista plików]
ppc64el	98,4 KiB	337,0 KiB	[lista plików]
s390x	87,2 KiB	261,0 KiB	[lista plików]