Pakiet: r-bioc-summarizedexperiment (1.20.0+dfsg-1)

[ Pakiet źródłowy: r-bioc-summarizedexperiment  ]

BioConductor assay container

The SummarizedExperiment container contains one or more assays, each represented by a matrix-like object of numeric or other mode. The rows typically represent genomic ranges of interest and the columns represent samples.

Inne pakiety związane z r-bioc-summarizedexperiment

• dep: r-api-4.0

  pakiet wirtualny udostępniany przez r-base-core

• dep: r-api-bioc-3.12

  pakiet wirtualny udostępniany przez r-bioc-biocgenerics

• dep: r-base-core (>= 4.0.3-1)

  GNU R core of statistical computation and graphics system

• dep: r-bioc-biobase

  base functions for Bioconductor

• dep: r-bioc-biocgenerics (>= 0.15.3)

  generic functions for Bioconductor

• dep: r-bioc-delayedarray (>= 0.15.10)

  BioConductor delayed operations on array-like objects

• dep: r-bioc-genomeinfodb (>= 1.13.1)

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicranges (>= 1.41.5)

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges (>= 2.23.9)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-matrixgenerics (>= 1.1.3)

  S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects

• dep: r-bioc-s4vectors (>= 0.27.12)

  BioConductor S4 implementation of vectors and lists

• dep: r-cran-matrix

  GNU R package of classes for dense and sparse matrices

• rec: r-bioc-annotate

  BioConductor annotation for microarrays

• rec: r-cran-digest

  GNU R package for 'hash digest' of R data structures

• rec: r-cran-runit

  GNU R package providing unit testing framework

• sug: r-bioc-annotationdbi

  GNU R Annotation Database Interface for BioConductor

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-genomicfeatures

  GNU R tools for making and manipulating transcript centric annotations

• sug: r-bioc-hdf5array (>= 1.7.5)

  HDF5 backend for DelayedArray objects

• sug: r-bioc-rhdf5

  BioConductor HDF5 interface to R

• sug: r-cran-jsonlite

  Robust, High Performance JSON Parser and Generator for R

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-testthat

  GNU R testsuite

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