Pakiet: cct (1:1.0.3-1)

[ Pakiet źródłowy: cct  ]

visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences

The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences of interest to existing genomes or sequence collections. The comparisons are conducted using BLAST, and the BLAST results are presented in the form of graphical maps that can also show sequence features, gene and protein names, COG category assignments, and sequence composition characteristics. CCT can generate maps in a variety of sizes, including 400 Megapixel maps suitable for posters. Comparisons can be conducted within a particular species or genus, or all available genomes can be used. The entire map creation process, from downloading sequences to redrawing zoomed maps, can be completed easily using scripts included with the CCT. User-defined features or analysis results can be included on maps, and maps can be extensively customized. To simplify program setup, a CCT virtual machine that includes all dependencies preinstalled is available. Detailed tutorials illustrating the use of CCT are included with the CCT documentation.

Inne pakiety związane z cct

• dep: bioperl

  Narzędzia do obliczeniowej biologii molekularnej, oparte na Perlu

• dep: cgview

  Circular Genome Viewer

• dep: imagemagick

  Programy do pracy z obrazami - pliki binarne
  również pakiet wirtualny udostępniany przez graphicsmagick-imagemagick-compat, imagemagick-6.q16

  lub graphicsmagick

  collection of image processing tools

• dep: liberror-perl

  Perl module for error/exception handling in an OO-ish way

• dep: libtie-ixhash-perl

  Perl module to order associative arrays

• dep: libwww-perl

  Prosty i spójny interfejs do WWW

• dep: ncbi-blast+-legacy

  NCBI Blast legacy call script

• dep: perl

  praktyczny język ekstrakcji i raportowania Larry'ego Walla

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