Pakiet: bio-rainbow (2.0.4+dfsg-2)
Odnośniki dla bio-rainbow
Zasoby systemu Debian:
- Raporty o błędach
- Developer Information
- Dziennik zmian w systemie Debian
- Informacje nt. praw autorskich
- Śledzenie łatek systemu Debian
Pobieranie pakietu źródłowego bio-rainbow:
- [bio-rainbow_2.0.4+dfsg-2.dsc]
- [bio-rainbow_2.0.4+dfsg.orig.tar.xz]
- [bio-rainbow_2.0.4+dfsg-2.debian.tar.xz]
Opiekunowie:
- Debian Med Packaging Team (Strona QA, Archiwum e-mail)
- Olivier Sallou (Strona QA)
- Pranav Ballaney (Strona QA)
Zasoby zewnętrzne:
- Strona internetowa [sourceforge.net]
Podobne pakiety:
clustering and assembling short reads for bioinformatics
Efficient tool for clustering and assembling short reads, especially for RAD.
Rainbow is developed to provide an ultra-fast and memory-efficient solution to clustering and assembling short reads produced by RAD-seq. First, Rainbow clusters reads using a spaced seed method. Then, Rainbow implements a heterozygote calling like strategy to divide potential groups into haplotypes in a top-down manner. long a guided tree, it iteratively merges sibling leaves in a bottom-up manner if they are similar enough. Here, the similarity is defined by comparing the 2nd reads of a RAD segment. This approach tries to collapse heterozygote while discriminate repetitive sequences. At last, Rainbow uses a greedy algorithm to locally assemble merged reads into contigs. Rainbow not only outputs the optimal but also suboptimal assembly results. Based on simulation and a real guppy RAD-seq data, it is shown that Rainbow is more competent than the other tools in dealing with RAD-seq data.
Inne pakiety związane z bio-rainbow
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- dep: libc6 (>= 2.29)
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również pakiet wirtualny udostępniany przez libc6-udeb
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Pobieranie bio-rainbow
Architektura | Rozmiar pakietu | Rozmiar po instalacji | Pliki |
---|---|---|---|
i386 | 63,9 KiB | 203,0 KiB | [lista plików] |